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Species belonging to selected taxon:

Sebastes rastrelliger



ABOUT THIS RECORD

ID: MNEST009847
species: Sebastes rastrelliger
miRNA family: mir-1827
source: miRNEST

Taxonomy by NCBI:
Sebastes rastrelliger Sebastes Sebastinae Sebastidae Scorpaenoidei Scorpaeniformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGGTAGTAGATTGAATAGT

miRNA*
TATACAGTCTACTGTCTTTCC

mismatches: 2
bulges: 0

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pre-miRNA
CATGGATGCTGTCCTTGGGGCTGAGGTAGTAGATTGAATAGTTGTGGGGTTGTGTAACCTCTTTTTGAGATAACTATACAGTCTACTGTCTTTCCCAAGG
AGACAGCCAGGTC


dot-bracket secondary structure
.......(((((((((((((..((((((((((((((.((((((((((((((....))))))........)))))))).))))))))))))))))))))))
)..))))......



SIMILARITIES
miRBase tni-let-7e: 2e-42

PMRD no hits

microPC no hits
UniProt no hits

RFAM let-7: 9e-36
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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